clinical research
Personalized Treatment Strategies for Lung Cancer
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Immune checkpoint inhibitors (ICIs) are a type of immunotherapy for various kinds of cancer, including lung cancer. However, there are several limitations of ICIs including immune-resistance, immune-related adverse events (irAEs), and heterogeneity in patient responses to ICIs. Since ICIs can cause serious adverse events and fatalities, personalized prediction of ICI response is becoming increasingly important. This aspect remains a challenge due to the patient’s immune system, the tumor microenvironment, and the complex interplay of factors influencing treatment efficacy.
Lung cancer is the leading cause of cancer-related death in the U.S. and globally. According to the Centers for Disease Control and Prevention, it is the third most common cause of cancer in the nation . and nearly 131,000 patients died from lung cancer in 2022. Moreover, since the five-year survival rate for lung cancer patients is only 22 percent, improved treatment methodologies are urgently needed. The two main categories of lung cancer, according to the World Health Organization, are small-cell lung cancer and non-small-cell lung cancer (NSCLC). Of these, the latter constitutes 80 percent of lung cancer cases.
Our study provides proof-of-concept evidence that plasma cell-free DNA 5hmC can accurately predict an immune checkpoint inhibitor treatment response in lung cancer. The use of novel and innovative markers to guide ICI therapy may improve the precision and effectiveness of treatment while reducing adverse effects. While further studies are needed to fully understand its role in immune checkpoint inhibitor treatment response, cell-free DNA 5hmC signatures could offer a powerful, highly sensitive and minimally invasive tool for guiding the clinical management of lung cancer patients.
Zejuan Li, MD, PhD, FACMG
Associate Professor, Pathology and Genomic Medicine
Zejuan Li, MD, PhD, FACMG, Associate Professor, Pathology and Genomic Medicine, and her team built a predictive model with a 5-Hydroxymethylcytosine (5hmC) signature significantly associated with progression-free survival for lung cancer. The study, published in the peer-reviewed journal Cells, provides proof-of-concept evidence that the 5hmC signature in cell-free DNA (cfDNA) is a robust biomarker for predicting ICI treatment response in lung cancer.
5hmC is a cytosine-derived DNA base that is important in gene expression, development, and DNA damage repair. ICIs induce distinct changes in plasma cfDNA 5hmC levels in lung cancer patients. This led Li to hypothesize that 5hmC is a potential marker to predict ICI treatment response. Li and her team performed genome-wide profiling of 5hmC in 85 plasma cfDNA samples from Stage III and Stage IV lung cancer patients collected between 2015 and 2022.
Zejuan Li, MD, PhD, FACMG
Li noted some hallmarks of 5hmC:
- Lung and many other types of cancer show global loss of 5hmC.
- Aberrant 5hmC levels are associated with cancer onset, progression and metastasis.
- 5hmC levels fluctuate during T cell development and differentiation.
- 5hmC levels closely correlate with the ability of tumors to evade immune detection.
- Low 5hmC levels in tumor tissue are correlated with poor prognosis in lung cancer.
- The cfDNA 5hmC prognostic signature is an independent predictor of overall survival in lung cancer patients.
- has high accuracy for ICI treatment response prediction.
- is able to capture dynamic and spatial heterogeneity in tumors.
- can accurately profile 5hmC with as little as 1-2 nanograms of cfDNA from plasma.
The model and methodology developed by Li’s team are superior to other prediction biomarkers used to predict ICI treatment response such as the programmed death ligand-1 since this method:
“Plasma cfDNA 5hmC markers offer a safe, simple, and non-invasive approach to lung cancer prognosis and treatment planning,” said Li.
Lung cancer is a complex disease affected by age, gender, patient biology as well as environmental and occupational exposure. Risk factors for lung cancer include:
- smoking
- passive smoking
- personal or familial lung cancer history
- exposure to harmful toxins: asbestos, radon, arsenic, chromium, nickel, soot, tar and diesel exhaust
- exposure to harmful chemicals and radiation
- exposure to air pollution
Current treatment strategies for NSCLC include surgical resection, chemotherapy, radiotherapy, targeted drug therapy and immunotherapy. Compared to other methods, immunotherapy (which includes ICIs, cancer vaccines and cellular immunotherapies) is effective across a broad patient population and has a tolerable safety profile. In many cases, immunotherapy is combined with other treatment modalities for greater efficacy.
Most metastatic NSCLC patients receive ICIs in combination with chemotherapy. However, many ICI-treated patients do not receive positive outcomes and about 87 percent suffer various irAEs, which affect the gastrointestinal tract, endocrine glands, skin, and liver. Some irAEs are fatal, which underscores the importance of personalized ICI treatment response prediction.
“Our study provides proof-of-concept evidence that plasma cfDNA 5hmC can accurately predict an ICI treatment response in lung cancer. The use of novel and innovative markers to guide ICI therapy may improve the precision and effectiveness of treatment while reducing adverse effects. While further studies are needed to fully understand its role in ICI treatment response, cfDNA 5hmC signatures could offer a powerful, highly sensitive, and minimally invasive tool for guiding the clinical management of lung cancer patients,” said Li.
The economic burden of lung cancer is significant. Lung cancer leads to significant societal and financial burdens for patients, caregivers and health insurance organizations. The per-patient annual cost of medical services for lung cancer patients ranges from 12,200 to 118,000. .
“The accurate prediction of ICI treatment response can help avoid unnecessary side effects and financial burdens for patients,” Li added.
Jianming Shao, Yitian Xu, Randall J Olsen, Saro Kasparian, Kai Sun, Sunil Mathur, Jun Zhang, Chuan He, Shu-Hsia Chen, Eric H Bernicker, Zejuan Li. 5-Hydroxymethylcytosine in Cell-Free DNA Predicts Immunotherapy Response in Lung Cancer. Cells. 2024 Apr 19;13(8):715. doi: 10.3390/cells13080715.
This work was supported by an American Cancer Society Research Scholar Grant RSG-17-044-01-LIB (Z.L.).
Abanti Chattopadhyay, PhD
January 2025
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